You can do that using Cognito triggers.

You can configure a trigger template to define a message with a link to a page you control. The assets will be stored at: amplify/backend/auth/<your-resource-name>CustomMessage/assets

The documentation has more details

Cognito allows you to configure your User Pool to send an email to your users when they attempt to register an account. You can configure this email to contain a link to Cognito’s Hosted UI where the user’s account will be marked as confirmed.

This trigger template allows you to define an email message with a link to a static S3 bucket that you control, where the user’s account will be confirmed and they can then be redirected to a URL of your choice (presumably your application). The URL will automatically contain the username as a query string parameters.

Please note that this trigger template will create an S3 resource. The files that populate the static site are available for edit in amplify/backend/auth/CustomMessage/assets. They consist of:

index.html
spinner.js (controls the spinner that appears on the page while users are awaiting confirmation)
style.css
verify.js (the script which performs the verification request)